STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2658KEGG: ccs:CCNA_01284 endo-1,4-beta-xylanase. (279 aa)    
Predicted Functional Partners:
Cseg_2660
Gluconolactonase; KEGG: ccs:CCNA_01282 gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein.
 
  
 0.911
Cseg_2659
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ccs:CCNA_01283 NAD-dependent oxidoreductase.
 
  
 0.901
Cseg_3431
KEGG: hypothetical protein.
 
     0.770
Cseg_1408
KEGG: ccs:CCNA_02102 glycosyl hydrolase.
  
     0.585
Cseg_2115
PFAM: protein of unknown function DUF1080; KEGG: cak:Caul_4614 hypothetical protein.
  
     0.580
Cseg_1766
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: ccs:CCNA_01029 alpha-L-rhamnosidase.
 
   0.579
Cseg_2108
PFAM: protein of unknown function DUF1080; KEGG: cak:Caul_4607 hypothetical protein.
  
     0.576
Cseg_2003
PFAM: protein of unknown function DUF303 acetylesterase putative; glycoside hydrolase family 2 sugar binding; KEGG: cak:Caul_2403 protein of unknown function DUF303 acetylesterase putative.
  
   
 0.568
Cseg_1782
PFAM: alpha-L-rhamnosidase; KEGG: ote:Oter_3716 alpha-L-rhamnosidase.
  
     0.548
Cseg_1776
KEGG: swi:Swit_1100 hypothetical protein.
 
     0.534
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.