STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2705KEGG: ccs:CCNA_01235 transcriptional regulatory protein. (207 aa)    
Predicted Functional Partners:
Cseg_2707
KEGG: ccs:CCNA_01232 cytosolic protein.
 
     0.814
Cseg_1288
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ccs:CCNA_02216 ABM family monooxygenase.
 
     0.757
Cseg_1916
KEGG: ccs:CCNA_01501 protein kinase C-like superfamily protein.
  
     0.756
dhmA
Alpha/beta hydrolase fold protein; Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons.
 
     0.754
Cseg_1476
KEGG: ccs:CCNA_01290 hypothetical protein.
  
     0.711
Cseg_2254
PFAM: Phosphoglycerate mutase; KEGG: ccs:CCNA_02044 phosphoglycerate mutase.
  
     0.698
Cseg_1291
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ccs:CCNA_02212 antibiotic induced protein, Drp35.
  
     0.687
Cseg_0209
KEGG: ccs:CCNA_03593 integral membrane protein.
  
     0.682
Cseg_2709
PFAM: sulfatase; KEGG: ccs:CCNA_01230 sulfatase family protein.
 
   
 0.668
Cseg_3783
KEGG: ccs:CCNA_00361 hypothetical protein.
  
    0.629
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.