STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2709PFAM: sulfatase; KEGG: ccs:CCNA_01230 sulfatase family protein. (551 aa)    
Predicted Functional Partners:
Cseg_2708
PFAM: protein of unknown function DUF323; KEGG: ccs:CCNA_01231 NIRV family protein.
 
   0.974
Cseg_2705
KEGG: ccs:CCNA_01235 transcriptional regulatory protein.
 
   
 0.668
Cseg_2704
Methyltransferase; KEGG: cak:Caul_1581 methyltransferase; TIGRFAM: methyltransferase; PFAM: Protein of unknown function DUF2260; protein of unknown function DUF323.
  
   0.641
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.554
Cseg_2712
PFAM: polysaccharide biosynthesis protein; KEGG: ccs:CCNA_01224 O-antigen and teichoic acid membrane transport protein.
  
  
 0.554
Cseg_2711
KEGG: ccs:CCNA_01225 glycerophosphotransferase-related protein.
       0.547
Cseg_1825
Beta-galactosidase; KEGG: cak:Caul_4083 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; Belongs to the glycosyl hydrolase 2 family.
 
 0.545
Cseg_3275
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: cak:Caul_4083 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 2 family.
 
 0.543
Cseg_2255
KEGG: ccs:CCNA_02045 acetyl-coenzyme A synthetase.
  
    0.535
Cseg_2714
PFAM: NAD-dependent epimerase/dehydratase; KEGG: ccs:CCNA_01222 NADH-ubiquinone oxidoreductase.
     
 0.533
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.