STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2729KEGG: mch:Mchl_3761 membrane protein. (333 aa)    
Predicted Functional Partners:
Cseg_2728
PFAM: glycosyl transferase group 1; KEGG: swi:Swit_3802 glycosyl transferase, group 1.
  
  
 0.806
Cseg_2491
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: hoh:Hoch_2313 endonuclease/exonuclease/phosphatase.
 
  
 0.562
Cseg_2730
PFAM: lipolytic protein G-D-S-L family; KEGG: ote:Oter_1336 GDSL family lipase.
       0.529
Cseg_2731
KEGG: cak:Caul_3552 hypothetical protein.
       0.529
Cseg_2732
KEGG: ote:Oter_1170 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 28 family.
       0.529
Cseg_2733
KEGG: sus:Acid_0532 hypothetical protein.
       0.529
Cseg_0949
KEGG: cti:RALTA_B1936 hypothetical protein.
 
   
 0.495
Cseg_2727
PFAM: Nucleotidyl transferase; KEGG: ccs:CCNA_01210 nucleotidyltransferase family protein.
 
     0.458
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.