STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhmD-2Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR). (392 aa)    
Predicted Functional Partners:
Cseg_2744
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hba:Hbal_2758 short-chain dehydrogenase/reductase SDR.
 
  
  0.973
Cseg_1772
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hba:Hbal_2758 short-chain dehydrogenase/reductase SDR.
 
  
  0.913
rhmD
Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR).
  
  
 
0.900
Cseg_2745
PFAM: amidohydrolase 2; KEGG: bac:BamMC406_1211 amidohydrolase 2.
 
   
 0.864
Cseg_2743
KEGG: cak:Caul_3609 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase.
  
  
 0.730
Cseg_2740
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hba:Hbal_2755 short-chain dehydrogenase/reductase SDR.
 
     0.680
Cseg_2747
Beta-galactosidase; KEGG: zmn:Za10_0394 beta-galactosidase; PFAM: glycoside hydrolase family 35; glycoside hydrolase family 43; Beta-galactosidase, domain 2; Belongs to the glycosyl hydrolase 35 family.
 
     0.648
rhaM
Protein of unknown function DUF718; Involved in the anomeric conversion of L-rhamnose.
     
 0.634
Cseg_1773
PFAM: amidohydrolase 2; KEGG: bac:BamMC406_1211 amidohydrolase 2.
 
   
 0.590
Cseg_2741
KEGG: mno:Mnod_6621 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR.
 
   
 0.568
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.