STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2761PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sal:Sala_0029 TonB-dependent receptor. (722 aa)    
Predicted Functional Partners:
Cseg_2760
PFAM: PepSY-associated TM helix domain protein; KEGG: sal:Sala_0028 PepSY-associated TM helix.
 
     0.917
Cseg_2516
PFAM: copper resistance D domain protein; KEGG: pzu:PHZ_c1480 putative copper export protein.
  
     0.614
Cseg_3901
PFAM: Abortive infection protein; KEGG: hne:HNE_0710 CAAX amino protease.
  
     0.592
Cseg_3823
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_1360 TonB-dependent receptor.
  
  
 0.576
Cseg_2032
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_2663 TonB-dependent receptor.
  
   
 0.563
Cseg_3023
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: hne:HNE_2423 TonB-dependent receptor.
  
   
 0.554
Cseg_0596
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: cak:Caul_2726 TonB-dependent receptor plug.
  
   
 0.549
Cseg_2979
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: hne:HNE_1470 putative TonB dependent receptor.
  
   
 0.535
Cseg_0688
TolA protein; KEGG: ccs:CCNA_03339 TolA protein.
  
 
 0.497
Cseg_3106
TIGRFAM: TonB family protein; KEGG: ccs:CCNA_02412 TonB protein.
  
 
 0.497
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.