STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2805KEGG: cak:Caul_3141 general stress protein. (162 aa)    
Predicted Functional Partners:
Cseg_3356
PFAM: CsbD family protein; KEGG: cak:Caul_1345 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
    0.836
Cseg_3394
KEGG: cak:Caul_0999 hypothetical protein.
  
    0.697
Cseg_2804
KEGG: ccs:CCNA_02556 hypothetical protein.
       0.570
Cseg_2128
PFAM: ribonuclease BN; KEGG: ccs:CCNA_01916 ribonuclease BN.
 
    0.522
Cseg_3415
Ribonuclease BN; KEGG: cak:Caul_0983 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN.
 
    0.520
Cseg_4069
Putative PAS/PAC sensor protein; KEGG: mrd:Mrad2831_6244 response regulator receiver modulated GAF sensor protein; PFAM: HWE histidine kinase; GAF domain protein; PAS fold-2 domain protein; Phytochrome central region domain protein; SMART: GAF domain protein.
 
     0.492
Cseg_0154
KEGG: pzu:PHZ_c0598 sensor histidine kinase; PFAM: HWE histidine kinase; PAS fold-4 domain protein; SMART: PAS domain containing protein.
  
     0.491
Cseg_3117
KEGG: ccs:CCNA_02418 uracil DNA glycosylase superfamily protein; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily.
 
     0.477
Cseg_3116
Radical SAM domain protein; KEGG: ccs:CCNA_02417 biotin synthase related domain containing protein; PFAM: Radical SAM domain protein; helix-hairpin-helix motif; SMART: Elongator protein 3/MiaB/NifB.
 
     0.464
Cseg_1205
KEGG: oan:Oant_4311 signal transduction histidine kinase; manually curated; PFAM: HWE histidine kinase; PAS fold-4 domain protein.
  
     0.435
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.