STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2820KEGG: ccs:CCNA_02252 methylcrotonyl-CoA carboxylase carboxyl transferase subunit; PFAM: carboxyl transferase. (538 aa)    
Predicted Functional Partners:
Cseg_2817
PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: ccs:CCNA_02250 methylcrotonyl-CoA carboxylase biotin-containing subunit.
 0.998
Cseg_2819
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccs:CCNA_02251 methylglutaconyl-CoA hydratase.
 
 0.990
Cseg_2823
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ccs:CCNA_02254 isovaleryl-CoA dehydrogenase.
 
 
 0.968
Cseg_2829
PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: ccs:CCNA_02261 propionyl-CoA carboxylase biotin-containing subunit.
 0.939
Cseg_0074
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ccs:CCNA_00077 acyl-CoA dehydrogenase, long-chain specific.
 
 
 0.933
Cseg_1652
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccs:CCNA_01414 3-hydroxyisobutyryl-CoA hydrolase.
  
 0.925
Cseg_1964
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccs:CCNA_01794 enoyl-CoA hydratase/isomerase family.
  
 0.925
Cseg_3787
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccs:CCNA_00358 delta 3,5-delta2,4-dienoyl-CoA isomerase precursor.
  
 0.925
Cseg_4266
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccs:CCNA_00006 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.925
Cseg_1238
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ccs:CCNA_01167 acyl-CoA dehydrogenase.
  
 
 0.924
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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