STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2824PFAM: glycoside hydrolase family 24; KEGG: ccs:CCNA_02255 lysozyme-family localization factor SpmX. (413 aa)    
Predicted Functional Partners:
Cseg_2823
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ccs:CCNA_02254 isovaleryl-CoA dehydrogenase.
     
 0.736
Cseg_1359
PFAM: Phosphoglycerate mutase; KEGG: ccs:CCNA_02152 phosphoglycerate mutase.
  
    0.667
Cseg_1944
KEGG: ccs:CCNA_01532 regulatory protein FlaY.
  
     0.662
Cseg_0553
KEGG: ccs:CCNA_00519 hypothetical protein.
  
     0.656
Cseg_2201
PFAM: outer membrane chaperone Skp (OmpH); KEGG: ccs:CCNA_01991 hypothetical protein.
  
     0.653
Cseg_2825
Magnesium transporter; Acts as a magnesium transporter.
       0.613
Cseg_1311
PFAM: endodeoxyribonuclease RusA; KEGG: ccs:CCNA_02192 hypothetical protein.
  
     0.592
Cseg_3944
PFAM: glycosyl transferase family 39; KEGG: ccs:CCNA_00209 undecaprenyl-phosphomannose:protein mannosyltransferase.
  
     0.588
Cseg_3195
Integral membrane sensor signal transduction histidine kinase; KEGG: ccs:CCNA_01116 histidine protein kinase DivJ; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
  
   
 0.587
Cseg_1546
Manually curated; KEGG: ccs:CCNA_01552 polar localization protein TipN.
 
     0.581
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.