STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2828PFAM: protein of unknown function DUF805; KEGG: ccs:CCNA_02260 hypothetical protein. (134 aa)    
Predicted Functional Partners:
Cseg_1546
Manually curated; KEGG: ccs:CCNA_01552 polar localization protein TipN.
  
     0.735
Cseg_3357
KEGG: cak:Caul_1344 hypothetical protein.
  
    0.722
Cseg_4159
KEGG: ccs:CCNA_03826 hypothetical protein.
  
     0.716
Cseg_0133
KEGG: ccs:CCNA_03665 hypothetical protein.
 
     0.712
Cseg_3934
PFAM: protein of unknown function DUF1353; KEGG: cak:Caul_4690 hypothetical protein.
  
     0.711
Cseg_2873
PFAM: Protein of unknown function DUF2125; KEGG: ccs:CCNA_02304 hypothetical protein.
  
     0.694
Cseg_4061
PFAM: aldo/keto reductase; KEGG: ccs:CCNA_03691 IolS protein.
  
     0.675
Cseg_0174
KEGG: ccs:CCNA_00236 hypothetical protein.
  
     0.654
Cseg_1254
KEGG: ccs:CCNA_01183 hypothetical protein.
  
     0.650
Cseg_2829
PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: ccs:CCNA_02261 propionyl-CoA carboxylase biotin-containing subunit.
       0.623
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.