STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2830KEGG: ccs:CCNA_02262 laminin G domain protein. (1262 aa)    
Predicted Functional Partners:
Cseg_2831
PFAM: protein of unknown function DUF336; KEGG: ccs:CCNA_02263 protein GlcG.
       0.785
Cseg_0967
KEGG: ccs:CCNA_02923 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
  
     0.760
Cseg_2455
KEGG: xca:xccb100_3595 TonB-dependent outer membrane receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
  
     0.726
Cseg_3136
Acid phosphatase; KEGG: ccs:CCNA_00576 oligopeptide-binding protein OppA; PFAM: histidine acid phosphatase.
  
     0.693
Cseg_3734
KEGG: ccs:CCNA_01021 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
  
     0.684
Cseg_2211
KEGG: ccs:CCNA_02001 phosphoserine phosphatase.
  
     0.665
Cseg_3740
TonB-dependent receptor; KEGG: ccs:CCNA_00455 N-acetyl-glucosamine/N-acetyl-chitin oligosaccharide outer membrane transporter NagA; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
  
     0.637
Cseg_2456
Glucose-1-phosphatase; KEGG: xca:xccb100_3594 phosphoanhydride phosphohydrolase / 4-phytase multifunctional enzyme, probable; PFAM: histidine acid phosphatase.
  
     0.631
Cseg_3139
KEGG: ccs:CCNA_00573 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
  
     0.577
Cseg_2003
PFAM: protein of unknown function DUF303 acetylesterase putative; glycoside hydrolase family 2 sugar binding; KEGG: cak:Caul_2403 protein of unknown function DUF303 acetylesterase putative.
  
     0.576
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.