STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2843PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: ccs:CCNA_02275 hypothetical protein. (261 aa)    
Predicted Functional Partners:
Cseg_3546
PFAM: conserved hypothetical protein; KEGG: ccs:CCNA_03156 hypothetical protein.
 
  
 0.906
Cseg_3545
PFAM: PepSY-associated TM helix domain protein; KEGG: ccs:CCNA_03155 transporter.
 
   
 0.812
Cseg_2842
KEGG: ccs:CCNA_02274 EF-Hand domain protein.
 
   
 0.805
Cseg_3548
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
    0.732
Cseg_3743
KEGG: cak:Caul_0288 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
 
     0.636
Cseg_1567
KEGG: pzu:PHZ_c2460 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
 
     0.597
Cseg_2426
KEGG: cak:Caul_1859 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
 
     0.590
Cseg_0493
KEGG: pzu:PHZ_c2460 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain.
 
     0.581
Cseg_3740
TonB-dependent receptor; KEGG: ccs:CCNA_00455 N-acetyl-glucosamine/N-acetyl-chitin oligosaccharide outer membrane transporter NagA; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
 
     0.564
Cseg_3549
PFAM: flavodoxin/nitric oxide synthase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: ccs:CCNA_03159 sulfite reductase (NADPH) flavoprotein alpha-component.
 
     0.562
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.