STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2844KEGG: ccs:CCNA_02277 hemin receptor; TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug. (741 aa)    
Predicted Functional Partners:
Cseg_1729
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_1631 TonB-dependent receptor.
  
    0.602
Cseg_2842
KEGG: ccs:CCNA_02274 EF-Hand domain protein.
     
 0.595
Cseg_2999
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_2726 TonB-dependent receptor plug.
  
  
 0.589
Cseg_2843
PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: ccs:CCNA_02275 hypothetical protein.
  
    0.543
Cseg_1994
KEGG: cak:Caul_2738 periplasmic binding protein.
 
  
 0.521
Cseg_3085
KEGG: ccs:CCNA_01585 TonB-dependent receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
  
  
 0.507
Cseg_0482
PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: cak:Caul_2647 TonB-dependent receptor.
  
  
 0.493
Cseg_3106
TIGRFAM: TonB family protein; KEGG: ccs:CCNA_02412 TonB protein.
 
 
 0.476
Cseg_0596
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: cak:Caul_2726 TonB-dependent receptor plug.
  
  
 0.475
Cseg_1815
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; KEGG: pat:Patl_3904 TonB-dependent receptor.
  
  
 0.474
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.