STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2911PFAM: pentapeptide repeat protein; KEGG: ccs:CCNA_02343 hypothetical protein. (422 aa)    
Predicted Functional Partners:
Cseg_0174
KEGG: ccs:CCNA_00236 hypothetical protein.
  
     0.706
Cseg_3797
PFAM: protein of unknown function DUF484; KEGG: ccs:CCNA_00350 hypothetical protein.
  
     0.665
parE
DNA topoisomerase IV, B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
   
 
 0.661
gpmA
Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
       0.628
Cseg_2910
PFAM: pentapeptide repeat protein; KEGG: ccs:CCNA_02342 hypothetical protein.
 
    
0.603
Cseg_2130
Response regulator receiver modulated diguanylate cyclase; KEGG: ccs:CCNA_01918 two-component response regulator; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
  
     0.598
Cseg_1372
PFAM: Tetratricopeptide TPR_4; KEGG: ccs:CCNA_02137 endoglucanase H.
 
  
 0.556
Cseg_1936
KEGG: ccs:CCNA_01524 FlbA protein; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat.
 
  
 0.540
Cseg_1336
PFAM: protein of unknown function DUF214; KEGG: ccs:CCNA_02172 transporter.
 
   
 0.538
Cseg_1546
Manually curated; KEGG: ccs:CCNA_01552 polar localization protein TipN.
 
     0.538
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.