STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2917PFAM: amidohydrolase; KEGG: gau:GAU_2057 hypothetical protein. (425 aa)    
Predicted Functional Partners:
Cseg_2916
PFAM: GCN5-related N-acetyltransferase; KEGG: ccs:CCNA_02348 acetyltransferase, GNAT family.
       0.627
hutH
TIGRFAM: histidine ammonia-lyase; KEGG: ccs:CCNA_01010 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
  
  
 0.583
Cseg_3395
PFAM: peptidase M28; KEGG: ccs:CCNA_00933 hypothetical protein.
  
     0.513
Cseg_2915
Phosphomannomutase; KEGG: ccs:CCNA_02347 phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase.
  
    0.455
Cseg_3709
PFAM: Amidohydrolase 3; KEGG: ccs:CCNA_00695 metal-dependent hydrolase.
  
     0.449
Cseg_3623
PFAM: N-formylglutamate amidohydrolase; KEGG: ccs:CCNA_00780 N-formylglutamate deformylase.
  
  
 0.439
Cseg_0479
KEGG: ccs:CCNA_03467 hypothetical protein.
  
     0.404
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.