STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2931PFAM: flavin reductase domain protein FMN-binding; KEGG: ccs:CCNA_02358 FMN reductase. (174 aa)    
Predicted Functional Partners:
Cseg_2037
PFAM: flavin reductase domain protein FMN-binding; KEGG: cak:Caul_2668 flavin reductase domain-containing protein.
  
     0.767
Cseg_2932
KEGG: ccs:CCNA_02362 GAF domain-containing protein.
       0.613
Cseg_2930
KEGG: ccs:CCNA_02357 malonate-semialdehyde dehydrogenase (acetylating)/methylmalonate-semialdehyde dehydrogenase (acylating); TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase.
     
 0.570
Cseg_2929
PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; KEGG: ccs:CCNA_02356 D-alanyl-D-alanine dipeptidase.
  
    0.533
Cseg_2933
KEGG: ara:Arad_1311 hypothetical protein.
       0.461
Cseg_1735
PFAM: Luciferase-like, subgroup; KEGG: pla:Plav_1774 alkanal monooxygenase.
 
  
 0.418
Cseg_2934
KEGG: hypothetical protein.
       0.402
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
Server load: medium (70%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.