STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2938Transcriptional regulator, LacI family; KEGG: ccs:CCNA_02367 maltose transport transcriptional repressor MalI; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI. (336 aa)    
Predicted Functional Partners:
Cseg_3141
KEGG: ccs:CCNA_00571 phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system, glucose-specific IIA subunit; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PTS system, glucose subfamily, IIA subunit; phosphocarrier, HPr family; PFAM: PEP-utilizing protein; sugar-specific permease EIIA 1 domain; phosphoryl transfer system HPr; PEP-utilising protein domain protein; PEP-utilising protein mobile region.
   
 
 0.823
Cseg_3738
KEGG: ccs:CCNA_00457 phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system, glucose-specific IIA subunit; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PTS system, glucose subfamily, IIA subunit; phosphocarrier, HPr family; PFAM: PEP-utilizing protein; sugar-specific permease EIIA 1 domain; phosphoryl transfer system HPr; PEP-utilising protein domain protein; PEP-utilising protein mobile region.
   
 
 0.823
Cseg_2937
PFAM: major facilitator superfamily MFS_1; KEGG: ccs:CCNA_02366 cytoplasmic membrane maltose transporter MalY.
 
   
 0.789
Cseg_4092
KEGG: ccs:CCNA_03722 glutamate synthase (NADPH) large chain; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
    
 
 0.699
Cseg_2936
TIGRFAM: glucan 1,4-alpha-glucosidase; KEGG: ccs:CCNA_02365 glucoamylase; PFAM: Glucodextranase N; glycoside hydrolase 15-related.
 
   
 0.694
Cseg_2940
KEGG: ccs:CCNA_02369 alpha-amylase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
 
  
 0.660
Cseg_2941
KEGG: ccs:CCNA_02370 TonB-dependent maltose outer membrane transporter MalA; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
  
   
 0.633
Cseg_2939
Manually curated; PFAM: alpha amylase catalytic region; KEGG: ccs:CCNA_02368 alpha-glucosidase; SMART: alpha amylase catalytic sub domain.
 
  
 0.612
Cseg_0471
PFAM: major facilitator superfamily MFS_1; KEGG: nar:Saro_1877 major facilitator transporter.
 
   
 0.586
Cseg_1080
PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ccs:CCNA_02698 inosine-uridine preferring nucleoside hydrolase.
     
 0.436
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.