STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2939Manually curated; PFAM: alpha amylase catalytic region; KEGG: ccs:CCNA_02368 alpha-glucosidase; SMART: alpha amylase catalytic sub domain. (546 aa)    
Predicted Functional Partners:
Cseg_2936
TIGRFAM: glucan 1,4-alpha-glucosidase; KEGG: ccs:CCNA_02365 glucoamylase; PFAM: Glucodextranase N; glycoside hydrolase 15-related.
    
 0.945
Cseg_0477
PFAM: ROK family protein; KEGG: ccs:CCNA_01192 fructokinase.
 
  
 0.927
Cseg_1839
KEGG: ote:Oter_1363 hypothetical protein.
  
 
 0.927
Cseg_0465
PFAM: glycoside hydrolase family 68; KEGG: cak:Caul_0964 levansucrase; Belongs to the glycosyl hydrolase 68 family.
  
 
 0.921
Cseg_2799
PFAM: ROK family protein; KEGG: ccs:CCNA_02549 glucokinase.
    
 0.914
Cseg_3290
PFAM: glycoside hydrolase family 31; KEGG: lch:Lcho_3217 alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family.
  
 
 0.910
Cseg_1824
PFAM: Glycoside hydrolase 97; KEGG: ccs:CCNA_00838 alpha-glucosidase.
    
  0.904
Cseg_2011
Alpha-galactosidase; PFAM: glycoside hydrolase clan GH-D; Glycosyl hydrolase family 98 putative carbohydrate binding module; KEGG: cak:Caul_2412 alpha-galactosidase; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.
     
 0.900
Cseg_2940
KEGG: ccs:CCNA_02369 alpha-amylase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
 
   
0.858
Cseg_1284
TIGRFAM: beta-galactosidase; KEGG: ccs:CCNA_02220 beta-glucosidase; PFAM: glycoside hydrolase family 1.
 
 
 0.826
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.