STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2949TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: ccs:CCNA_02385 3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase class II. (459 aa)    
Predicted Functional Partners:
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
 
  
 0.938
Cseg_0567
Phospho-2-dehydro-3-deoxyheptonate aldolase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).
     
 0.912
Cseg_1242
PFAM: Chorismate mutase, type II; KEGG: ccs:CCNA_01173 chorismate mutase.
   
 
 0.720
Cseg_2874
PFAM: Chorismate mutase, type II; KEGG: ccs:CCNA_02305 chorismate mutase-family protein.
   
 
 0.720
Cseg_2951
Glutathione-disulfide reductase; Maintains high levels of reduced glutathione.
       0.601
Cseg_2948
PFAM: Peptidase A2A, retrovirus RVP subgroup; KEGG: cak:Caul_3541 hypothetical protein.
       0.569
Cseg_2950
PFAM: O-antigen polymerase; KEGG: ccs:CCNA_02386 O-antigen ligase related enzyme.
       0.551
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.480
glmU
UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.
       0.479
Cseg_2947
PFAM: AMP-dependent synthetase and ligase; KEGG: ccs:CCNA_02384 very-long-chain acyl-CoA synthetase.
       0.406
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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