STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2976PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pmy:Pmen_1651 short-chain dehydrogenase/reductase SDR. (252 aa)    
Predicted Functional Partners:
Cseg_2320
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ccs:CCNA_01728 short chain dehydrogenase.
  
     0.693
Cseg_2975
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bvi:Bcep1808_2561 LysR family transcriptional regulator.
       0.528
Cseg_2977
PFAM: protein of unknown function DUF1486; KEGG: rop:ROP_32090 hypothetical protein.
       0.515
Cseg_2974
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_A2677 putative short-chain dehydrogenase/oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    
0.511
Cseg_2411
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bid:Bind_1470 short chain dehydrogenase.
  
 
   0.498
Cseg_2304
KEGG: ccs:CCNA_01746 malonyl-CoA-(acyl-carrier-protein) transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase.
 
 
 0.441
Cseg_1766
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: ccs:CCNA_01029 alpha-L-rhamnosidase.
   
 
 0.420
Cseg_2709
PFAM: sulfatase; KEGG: ccs:CCNA_01230 sulfatase family protein.
   
 
 0.420
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.