STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3019PFAM: HpcH/HpaI aldolase; KEGG: rpe:RPE_1802 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (260 aa)    
Predicted Functional Partners:
Cseg_0814
KEGG: cak:Caul_3954 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.909
Cseg_1571
KEGG: ccs:CCNA_01577 2-keto-4-pentenoate hydratase family protein.
  
  
 0.759
Cseg_3018
PFAM: alanine racemase domain protein; KEGG: mlo:mll6666 D-serine deaminase.
       0.654
Cseg_3020
TIGRFAM: FAD-linked oxidoreductase; KEGG: cak:Caul_2680 FAD-linked oxidoreductase; PFAM: D-arabinono-14-lactone oxidase; FAD linked oxidase domain protein.
  
    0.615
Cseg_3017
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rha:RHA1_ro06693 5-valerolactone hydrolase.
 
     0.524
nnrE
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
     
 0.516
Cseg_2629
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: ccs:CCNA_01645 3-hydroxyisobutyrate dehydrogenase.
 
  
 0.462
Cseg_0603
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: cak:Caul_0875 6-phosphogluconate dehydrogenase NAD-binding.
 
  
 0.459
Cseg_1799
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: cak:Caul_1802 extradiol ring-cleavage dioxygenase class III protein subunit B.
  
  
 0.445
Cseg_3454
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ccs:CCNA_03053 dioxygenase.
  
  
 0.445
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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