STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3040KEGG: mno:Mnod_2117 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR. (200 aa)    
Predicted Functional Partners:
Cseg_3609
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: ccs:CCNA_00796 oxygen sensory histidine kinase FixL; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein.
 
 0.989
Cseg_3610
Two component transcriptional regulator, LuxR family; KEGG: ccs:CCNA_00795 two-component response regulator FixJ; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR.
  
  
 
0.904
Cseg_2074
PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: bja:blr0257 two-component sensor histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein.
 
 
 0.886
Cseg_3214
PFAM: MCP methyltransferase CheR-type; KEGG: swi:Swit_5354 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type.
      0.605
Cseg_0694
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; response regulator receiver; KEGG: ccs:CCNA_03333 PAS-family sensor histidine kinase; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein.
 
 
 
 0.589
Cseg_3069
Two component transcriptional regulator, winged helix family; KEGG: xop:PXO_00241 VirG; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
  
   
 0.563
Cseg_3980
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: rec:RHECIAT_CH0002504 putative two-component sensor histidine kinase protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.
 
 
 0.554
Cseg_0414
Two component transcriptional regulator, winged helix family; KEGG: pzu:PHZ_c1903 response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain); PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
  
   
 0.541
Cseg_0955
Two component transcriptional regulator, winged helix family; KEGG: cak:Caul_3286 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
  
   
 0.539
Cseg_0979
KEGG: cak:Caul_2539 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
 
 
 0.529
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.