STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3057KEGG: scl:sce1255 cytochrome c. (164 aa)    
Predicted Functional Partners:
Cseg_0538
Cytochrome b/b6 domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.853
Cseg_1884
KEGG: ccs:CCNA_01468 cytochrome cbb3 oxidase, cytochrome c subunit CcoO; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO.
  
 
 0.834
Cseg_1883
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; KEGG: ccr:CC_1401 cytochrome c oxidase, CcoN subunit; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.814
Cseg_0537
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.808
Cseg_2508
TIGRFAM: arsenite oxidase, small subunit; KEGG: xau:Xaut_3949 arsenite oxidase small subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain.
  
 
 0.808
Cseg_0288
Cytochrome-c oxidase; KEGG: ccs:CCNA_03513 cytochrome c oxidase subunit III CoxC; PFAM: cytochrome c oxidase subunit III.
  
 
 0.776
Cseg_3728
KEGG: ccs:CCNA_01849 quinol cytochrome oxidase polypeptide III; TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III.
  
 
 0.776
Cseg_3031
KEGG: pzu:PHZ_c0619 nitric oxide reductase, subunit B.
 
 
 0.764
Cseg_0101
KEGG: cak:Caul_4778 putative signal peptide protein.
  
 
 0.727
Cseg_2107
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: ccs:CCNA_01706 dehydrogluconate dehydrogenase.
 
 
 
 0.690
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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