STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3066PFAM: Cupin 2 conserved barrel domain protein; KEGG: mdi:METDI5604 putative mannose-6-phosphate isomerase. (144 aa)    
Predicted Functional Partners:
Cseg_3067
Integral membrane sensor signal transduction histidine kinase; KEGG: msl:Msil_3904 two-component VirA-like sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
       0.520
Cseg_3068
KEGG: msl:Msil_3903 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase.
       0.520
Cseg_3069
Two component transcriptional regulator, winged helix family; KEGG: xop:PXO_00241 VirG; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
       0.465
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.