STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3072PFAM: AMP-dependent synthetase and ligase; KEGG: bbt:BBta_6949 feruloyl-CoA synthase. (601 aa)    
Predicted Functional Partners:
Cseg_2365
KEGG: cak:Caul_1134 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
  
     0.659
Cseg_3073
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mlo:mlr1841 p-hydroxycinnamoyl CoA hydratase/lyase.
 
  0.653
Cseg_2345
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccs:CCNA_02484 trans-feruloyl-CoA hydratase.
 
  0.651
Cseg_2348
TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; KEGG: cak:Caul_3846 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase FAD-binding.
  
   
 0.625
Cseg_1759
TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; KEGG: cak:Caul_3846 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase FAD-binding.
  
   
 0.618
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.616
Cseg_0771
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: ccs:CCNA_03293 enoyl-CoA hydratase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.605
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
    
 
 0.575
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
   0.572
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.565
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.