STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3080KEGG: cak:Caul_4164 HlyD family type I secretion membrane fusion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein. (463 aa)    
Predicted Functional Partners:
Cseg_3079
TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; peptidase C39 bacteriocin processing; KEGG: cak:Caul_4165 type I secretion system ATPase; SMART: AAA ATPase.
 
 0.989
Cseg_3265
TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; KEGG: ccs:CCNA_01060 type I protein secretion ATP-binding protein RsaD; SMART: AAA ATPase.
  
 0.751
Cseg_3482
PFAM: Hemolysin-type calcium-binding region; KEGG: swi:Swit_4004 hemolysin-type calcium-binding region.
 
  
 0.708
Cseg_1274
PFAM: Hemolysin-type calcium-binding region; KEGG: pol:Bpro_4929 hemolysin-type calcium-binding region.
 
  
 0.648
Cseg_1336
PFAM: protein of unknown function DUF214; KEGG: ccs:CCNA_02172 transporter.
  
  
 0.616
Cseg_1612
KEGG: ccs:CCNA_01379 type I secretion outer membrane protein rsaFb; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein.
 
 
 0.610
Cseg_3147
KEGG: cvi:CV_2848 outer membrane component of multidrug efflux pump; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein.
 
 
 0.556
Cseg_2040
KEGG: ccs:CCNA_01863 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein.
 
 
 0.554
Cseg_3259
KEGG: ccs:CCNA_01067 type I secretion outer membrane protein RsaFa; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein.
  
 
 0.535
Cseg_3077
PFAM: glycoside hydrolase family 81; KEGG: tfu:Tfu_2130 hypothetical protein.
       0.525
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.