STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3086KEGG: ccs:CCNA_03073 hypothetical protein. (158 aa)    
Predicted Functional Partners:
Cseg_3087
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ccs:CCNA_03074 C factor cell-cell signaling protein.
       0.773
Cseg_4208
KEGG: ccs:CCNA_03813 intermediate filament-like cell shape determinant CreS.
 
     0.736
Cseg_0950
PFAM: GtrA family protein; KEGG: ccs:CCNA_02984 monosaccharide translocase (flippase type).
 
     0.705
Cseg_0773
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: ccs:CCNA_03291 hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
  
     0.694
Cseg_3601
PFAM: protein of unknown function DUF437; KEGG: ccs:CCNA_00804 hypothetical protein.
  
     0.674
Cseg_3270
PFAM: glycosyl transferase group 1; KEGG: ccs:CCNA_01055 glyscosyl transferase.
  
     0.658
Cseg_1955
KEGG: ccs:CCNA_01543 chaperone protein DnaK.
   
 
 0.651
Cseg_0441
KEGG: ccs:CCNA_00667 capsular polysaccharide biosynthesis protein.
  
     0.645
Cseg_3188
Response regulator receiver protein; PFAM: LytTr DNA-binding region; KEGG: ccr:CC_0551 hypothetical protein.
 
     0.633
Cseg_4067
PFAM: cyclase/dehydrase; KEGG: ccs:CCNA_03697 cyclase/dehydrase.
  
     0.626
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.