STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3100PFAM: protein of unknown function DUF330; KEGG: ccs:CCNA_02406 membrane lipoprotein. (211 aa)    
Predicted Functional Partners:
Cseg_3099
PFAM: Mammalian cell entry related domain protein; KEGG: ccs:CCNA_02405 ABC membrane transporter, periplasmic component.
 
   0.961
Cseg_3098
KEGG: ccs:CCNA_02404 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    0.902
Cseg_3097
PFAM: protein of unknown function DUF140; KEGG: ccs:CCNA_02403 ABC transporter permease protein.
 
  
 0.882
Cseg_1546
Manually curated; KEGG: ccs:CCNA_01552 polar localization protein TipN.
  
     0.641
Cseg_0174
KEGG: ccs:CCNA_00236 hypothetical protein.
  
     0.627
Cseg_1966
PFAM: Septum formation initiator; KEGG: ccs:CCNA_01797 septum formation initiator.
  
     0.588
Cseg_1368
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.586
Cseg_3340
KEGG: ccs:CCNA_01005 flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; Belongs to the flagella basal body rod proteins family.
    
   0.586
Cseg_2873
PFAM: Protein of unknown function DUF2125; KEGG: ccs:CCNA_02304 hypothetical protein.
  
     0.566
Cseg_0553
KEGG: ccs:CCNA_00519 hypothetical protein.
  
     0.564
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.