STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3105PFAM: Lytic transglycosylase catalytic; KEGG: ccs:CCNA_02411 putative lytic transglycosylase PleA. (292 aa)    
Predicted Functional Partners:
Cseg_1372
PFAM: Tetratricopeptide TPR_4; KEGG: ccs:CCNA_02137 endoglucanase H.
 
     0.757
Cseg_1112
PFAM: Flagellar assembly regulator FliX, class II; KEGG: ccs:CCNA_02664 flagellar assembly regulator FliX.
  
     0.711
Cseg_3386
PFAM: flagellar hook-length control protein; KEGG: cak:Caul_1008 flagellar hook-length control protein.
  
     0.690
Cseg_2630
PFAM: OmpA/MotB domain protein; KEGG: ccs:CCNA_01644 chemotaxis MotB protein.
 
  
 0.661
Cseg_1110
PFAM: Flagellar protein FlgJ-like; KEGG: ccs:CCNA_02666 chemotactic signal-response protein CheL.
 
   
 0.658
Cseg_1613
PFAM: Protein of unknown function DUF2497; KEGG: ccs:CCNA_01380 pole-organizing protein PopZ.
  
     0.651
Cseg_2867
TIGRFAM: MJ0042 family finger-like protein; KEGG: ccs:CCNA_02298 MJ0042 family finger-like domain protein.
  
     0.645
Cseg_2664
KEGG: ccs:CCNA_01278 histidine phosphotransferase domain protein.
  
     0.639
Cseg_2826
PFAM: surface presentation of antigens (SPOA) protein; KEGG: cak:Caul_3160 hypothetical protein.
  
     0.636
Cseg_1368
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.633
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.