STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3131Manually curated; TIGRFAM: NCS1 nucleoside transporter family; KEGG: ccs:CCNA_02432 cytosine/uracil/thiamine/allantoin permease family protein; PFAM: permease for cytosine/purines uracil thiamine allantoin. (486 aa)    
Predicted Functional Partners:
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
       0.564
Cseg_0366
KEGG: ccs:CCNA_00392 dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3.
  
  
 0.539
Cseg_3128
KEGG: ccs:CCNA_02429 arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.
       0.522
Cseg_3129
PFAM: conserved hypothetical protein; KEGG: ccs:CCNA_02430 conserved cytosolic protein; Belongs to the UPF0262 family.
       0.522
Cseg_1092
TIGRFAM: amidase, hydantoinase/carbamoylase family; KEGG: ccs:CCNA_02686 N-carbamoyl-L-amino acid hydrolase; PFAM: peptidase M20.
 
  
 0.496
Cseg_3125
PFAM: RNA-binding protein AU-1/Ribonuclease E/G; KEGG: ccs:CCNA_02426 ribonuclease, CafA family.
 
     0.485
Cseg_1075
Hydroxyisourate hydrolase; KEGG: ccs:CCNA_02703 urate oxidase; TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
   
 0.481
Cseg_3132
KEGG: ccs:CCNA_02434 cytosolic protein.
       0.457
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.457
Cseg_2775
KEGG: ccs:CCNA_02526 dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase.
  
  
 0.426
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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