STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3138KEGG: ccs:CCNA_00574 alpha-N-acetylglucosaminidase; PFAM: alpha-N-acetylglucosaminidase. (770 aa)    
Predicted Functional Partners:
Cseg_3137
PFAM: Protein of unknown function DUF2261, transmembrane; KEGG: ccs:CCNA_00575 hypothetical protein.
 
  
  0.919
Cseg_3136
Acid phosphatase; KEGG: ccs:CCNA_00576 oligopeptide-binding protein OppA; PFAM: histidine acid phosphatase.
 
     0.815
Cseg_3139
KEGG: ccs:CCNA_00573 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
 
     0.720
Cseg_1823
KEGG: xcv:XCV3214 beta-galactosidase; PFAM: glycoside hydrolase family 35.
 
  
 0.716
Cseg_3135
KEGG: ccr:CC_0543 hypothetical protein.
 
     0.609
rpsP
KEGG: ccs:CCNA_03767 SSU ribosomal protein S16P; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
   0.562
Cseg_3739
KEGG: ccs:CCNA_00456 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core.
 
 
 
 0.533
Cseg_1520
Nucleotide diphosphatase; KEGG: ccs:CCNA_01336 phosphodiesterase I/nucleotide pyrophosphatase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase.
  
 
  0.520
Cseg_1837
KEGG: ccs:CCNA_00837 alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); SMART: glycoside hydrolase family 29 (alpha-L-fucosidase).
 
   
 0.505
Cseg_4208
KEGG: ccs:CCNA_03813 intermediate filament-like cell shape determinant CreS.
  
     0.493
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.