STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3150PFAM: Fusaric acid resistance protein conserved region; KEGG: vap:Vapar_0867 fusaric acid resistance protein conserved region. (673 aa)    
Predicted Functional Partners:
Cseg_3148
PFAM: secretion protein HlyD family protein; KEGG: rme:Rmet_4791 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.959
Cseg_3149
PFAM: protein of unknown function DUF1656; KEGG: mpo:Mpop_0239 protein of unknown function DUF1656.
 
   
 0.956
Cseg_3151
KEGG: bpe:BP2664 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
 
   
 0.938
Cseg_3147
KEGG: cvi:CV_2848 outer membrane component of multidrug efflux pump; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein.
 
   
 0.822
Cseg_0527
PFAM: nitrogen-fixing NifU domain protein; KEGG: ccs:CCNA_00494 transport protein.
   
    0.687
Cseg_3146
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_01196 iron-regulated outer membrane virulence protein.
       0.610
Cseg_3152
PFAM: dienelactone hydrolase; KEGG: cak:Caul_0145 dienelactone hydrolase.
       0.477
Cseg_2909
PFAM: heat shock protein Hsp20; KEGG: ccs:CCNA_02341 small heat shock protein; Belongs to the small heat shock protein (HSP20) family.
  
     0.438
Cseg_2101
XapX domain protein; KEGG: smd:Smed_3973 hypothetical protein; TIGRFAM: XapX domain protein; PFAM: protein of unknown function DUF1427.
  
     0.433
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.