STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3165Ribonuclease III; KEGG: ccs:CCNA_02456 ribonuclease III. (245 aa)    
Predicted Functional Partners:
Cseg_0999
PFAM: Phage conserved hypothetical protein, gene transfer agent-like-like; KEGG: ccs:CCNA_02864 phage protein.
 
 
   0.909
Cseg_0998
PFAM: conserved hypothetical protein; KEGG: ccs:CCNA_02865 phage protein.
 
 
   0.907
Cseg_0985
Phage portal protein, HK97 family; KEGG: ccs:CCNA_02877 portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein.
 
 
 0.903
Cseg_0992
KEGG: ccs:CCNA_02870 phage protein; TIGRFAM: phage major tail protein, TP901-1 family; PFAM: Phage major tail protein, TP901-1, subfamily 1.
 
 
   0.903
Cseg_0989
KEGG: ccs:CCNA_02872 phage prohead protease; TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97.
 
 
 
 0.888
Cseg_1001
KEGG: cak:Caul_3901 gene transfer agent (GTA) orfg15, like protein.
 
 
   0.868
Cseg_0991
KEGG: ccs:CCNA_02871 gene transfer agent (GTA)-related protein.
 
 
   0.823
Cseg_1000
KEGG: ccs:CCNA_02863 Spr-family cell wall-associated hydrolase; TIGRFAM: phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein.
 
  
 0.808
Cseg_0987
Phage prohead protease, HK97 family; KEGG: ccs:CCNA_02874 phage prohead protease; TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97.
 
   
 0.758
Cseg_0983
PFAM: protein of unknown function DUF264; KEGG: ccs:CCNA_02880 phage DNA packaging protein.
 
     0.736
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.