STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3199PFAM: Protein of unknown function DUF2383; KEGG: cak:Caul_1205 hypothetical protein. (149 aa)    
Predicted Functional Partners:
Cseg_3334
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; KEGG: cak:Caul_1376 substrate-binding region of ABC-type glycine betaine transport system.
  
    0.643
Cseg_3110
KEGG: pzu:PHZ_c1134 DNA topoisomerase IB.
 
    0.558
Cseg_0657
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
   
  
 0.557
Cseg_3200
SMART: regulatory protein ArsR; KEGG: cak:Caul_1369 ArsR family transcriptional regulator.
       0.553
Cseg_0425
KEGG: cak:Caul_0610 sulfate transporter/antisigma-factor antagonist STAS.
   
  
 0.543
Cseg_3754
KEGG: ccs:CCNA_00440 virus protein.
   
  
 0.543
Cseg_3213
KEGG: swi:Swit_5353 multi-sensor hybrid histidine kinase; PFAM: CHASE3 domain protein; GAF domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; response regulator receiver.
  
    0.542
Cseg_0890
PFAM: 17 kDa surface antigen; KEGG: cak:Caul_0943 17 kDa surface antigen.
   
  
 0.490
Cseg_3251
KEGG: ccs:CCNA_01076 beta/gamma crystallin domain protein; PFAM: beta and gamma crystallin; SMART: beta and gamma crystallin.
   
  
 0.490
Cseg_3214
PFAM: MCP methyltransferase CheR-type; KEGG: swi:Swit_5354 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type.
  
     0.476
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.