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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3209PFAM: TPR repeat-containing protein; KEGG: cak:Caul_2992 sulfotransferase. (638 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
  
 0.894
Cseg_3210
PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: cak:Caul_2993 hypothetical protein.
 
    0.830
Cseg_3208
PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: cak:Caul_2991 aspartyl/asparaginyl beta-hydroxylase.
 
     0.823
Cseg_3211
KEGG: cak:Caul_2994 hypothetical protein.
 
     0.821
phnX
Phosphonoacetaldehyde hydrolase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.
       0.776
Cseg_3207
KEGG: cak:Caul_2990 FAD dependent oxidoreductase; TIGRFAM: FAD dependent oxidoreductase TIGR03364; PFAM: FAD dependent oxidoreductase.
  
    0.775
Cseg_3212
KEGG: cak:Caul_2995 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
 
    0.657
Cseg_0826
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_03227 TonB-dependent receptor.
  
     0.640
Cseg_0247
PFAM: Peptidase M23; KEGG: ccs:CCNA_03547 peptidoglycan-specific endopeptidase, M23 family.
   
 
 0.607
Cseg_3478
KEGG: avn:Avin_05080 cellulose synthase subunit C; PFAM: cellulose synthase operon C domain protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; RNA-processing protein HAT helix repeating-containing protein.
     
 0.573
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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