STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3211KEGG: cak:Caul_2994 hypothetical protein. (212 aa)    
Predicted Functional Partners:
Cseg_3210
PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: cak:Caul_2993 hypothetical protein.
 
     0.873
Cseg_3209
PFAM: TPR repeat-containing protein; KEGG: cak:Caul_2992 sulfotransferase.
 
     0.821
Cseg_3208
PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: cak:Caul_2991 aspartyl/asparaginyl beta-hydroxylase.
       0.779
phnX
Phosphonoacetaldehyde hydrolase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.
       0.773
Cseg_3207
KEGG: cak:Caul_2990 FAD dependent oxidoreductase; TIGRFAM: FAD dependent oxidoreductase TIGR03364; PFAM: FAD dependent oxidoreductase.
       0.773
Cseg_3212
KEGG: cak:Caul_2995 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
       0.592
Cseg_4092
KEGG: ccs:CCNA_03722 glutamate synthase (NADPH) large chain; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
     
 0.435
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.