STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3219KEGG: ccs:CCNA_01111 DnaA-related protein; PFAM: Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain. (123 aa)    
Predicted Functional Partners:
Cseg_3218
KEGG: ccs:CCNA_01112 hypothetical protein.
 
 
 
 0.879
Cseg_0991
KEGG: ccs:CCNA_02871 gene transfer agent (GTA)-related protein.
  
     0.708
Cseg_1240
Histidine phosphotransferase ShpA; Manually curated; KEGG: ccs:CCNA_01171 histidine phosphotransferase ShpA.
  
   
 0.678
Cseg_2313
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
   
 
 0.649
Cseg_0989
KEGG: ccs:CCNA_02872 phage prohead protease; TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97.
  
   
 0.621
Cseg_2679
KEGG: ccs:CCNA_01260 hypothetical protein.
  
     0.617
Cseg_1000
KEGG: ccs:CCNA_02863 Spr-family cell wall-associated hydrolase; TIGRFAM: phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein.
  
     0.616
Cseg_1001
KEGG: cak:Caul_3901 gene transfer agent (GTA) orfg15, like protein.
  
   
 0.614
Cseg_0535
KEGG: ccs:CCNA_00503 hypothetical protein.
  
     0.608
Cseg_0992
KEGG: ccs:CCNA_02870 phage protein; TIGRFAM: phage major tail protein, TP901-1 family; PFAM: Phage major tail protein, TP901-1, subfamily 1.
  
     0.599
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.