STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3224PFAM: glycosyl transferase group 1; KEGG: ccs:CCNA_01104 glycosyltransferase. (393 aa)    
Predicted Functional Partners:
Cseg_3225
PFAM: glycosyl transferase family 9; KEGG: cak:Caul_1197 glycosyl transferase family protein.
 
  
 0.852
Cseg_0934
Protein of unknown function DUF1022; KEGG: ccs:CCNA_02942 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1022.
 
     0.767
Cseg_3223
PFAM: alpha/beta hydrolase fold; KEGG: ccs:CCNA_01105 alpha/beta hydrolase family protein.
  
    0.579
Cseg_2950
PFAM: O-antigen polymerase; KEGG: ccs:CCNA_02386 O-antigen ligase related enzyme.
 
  
 0.528
Cseg_4122
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.513
Cseg_0561
KEGG: ccs:CCNA_00529 hypothetical protein.
  
     0.497
Cseg_1870
KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase; PFAM: sugar transferase.
  
  
 0.492
Cseg_2765
KEGG: ccr:CC_2425 HfsE; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.492
Cseg_2901
PFAM: lipid A biosynthesis acyltransferase; KEGG: ccs:CCNA_02333 lipid A biosynthesis lauroyl acyltransferase.
 
  
 0.489
Cseg_2289
PFAM: permease YjgP/YjgQ family protein; KEGG: ccs:CCNA_01762 hypothetical protein.
  
     0.480
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.