STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3249PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: cak:Caul_1275 peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin. (351 aa)    
Predicted Functional Partners:
Cseg_1336
PFAM: protein of unknown function DUF214; KEGG: ccs:CCNA_02172 transporter.
 
     0.677
Cseg_2516
PFAM: copper resistance D domain protein; KEGG: pzu:PHZ_c1480 putative copper export protein.
  
     0.652
Cseg_2662
PFAM: Protein of unknown function DUF2336; KEGG: ccs:CCNA_01280 hypothetical protein.
  
     0.652
Cseg_4261
KEGG: cak:Caul_5053 hypothetical protein.
  
     0.638
Cseg_3250
PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; KEGG: cak:Caul_1274 ErfK/YbiS/YcfS/YnhG family protein.
 
     0.621
Cseg_4159
KEGG: ccs:CCNA_03826 hypothetical protein.
  
     0.617
Cseg_1488
KEGG: ccs:CCNA_01303 hypothetical protein.
  
     0.594
Cseg_4033
PFAM: Entericidin EcnAB; KEGG: ccs:CCNA_03587 entericidin B-like protein.
  
     0.574
Cseg_3121
TIGRFAM: TonB family protein; KEGG: ccs:CCNA_02419 TonB1 protein.
 
     0.571
Cseg_1254
KEGG: ccs:CCNA_01183 hypothetical protein.
  
     0.566
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.