STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3266PFAM: Hemolysin-type calcium-binding region; KEGG: sit:TM1040_3840 hemolysin-type calcium-binding region. (1236 aa)    
Predicted Functional Partners:
Cseg_3265
TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; KEGG: ccs:CCNA_01060 type I protein secretion ATP-binding protein RsaD; SMART: AAA ATPase.
 
   
 0.726
Cseg_3264
KEGG: ccs:CCNA_01061 type I secretion adaptor protein RsaE; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein.
 
   
 0.648
Cseg_3466
KEGG: bxe:Bxe_B0221 GAF sensor hybrid histidine kinase; PFAM: HWE histidine kinase; MASE1 domain protein; GAF domain protein; SMART: GAF domain protein.
 
  
 0.533
Cseg_3024
KEGG: bja:blr3932 N,N-dimethylformamidase large subunit.
  
    0.524
Cseg_3267
Transcriptional regulator, XRE family; KEGG: ccs:CCNA_01058 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
       0.449
Cseg_4116
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
     
 0.437
Cseg_1353
KEGG: ccs:CCNA_02156 hypothetical protein.
 
 
 
 0.408
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.