STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3319PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; KEGG: ccs:CCNA_01034 TonB-dependent outer membrane receptor. (1093 aa)    
Predicted Functional Partners:
Cseg_2258
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_02048 TonB-dependent receptor.
  
    0.707
Cseg_0915
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_1672 TonB-dependent receptor.
  
    0.659
Cseg_1577
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_3861 TonB-dependent receptor, plug.
  
     0.609
Cseg_1963
PFAM: Peptidase A2A, retrovirus RVP subgroup; KEGG: ccs:CCNA_01793 hypothetical protein.
  
     0.588
Cseg_3320
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: ccs:CCNA_01033 FecR family protein.
 
    0.586
Cseg_1003
PFAM: TonB-dependent receptor plug; KEGG: ccs:CCNA_02106 TonB-dependent outer membrane receptor.
  
     0.568
Cseg_1272
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_02232 TonB-dependent receptor.
  
    0.557
Cseg_2908
Methyltransferase; KEGG: ccs:CCNA_02340 methyltransferase.
  
     0.548
Cseg_0591
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_03444 TonB-dependent receptor.
  
    0.544
Cseg_3106
TIGRFAM: TonB family protein; KEGG: ccs:CCNA_02412 TonB protein.
 
 
 0.539
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.