STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3415Ribonuclease BN; KEGG: cak:Caul_0983 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN. (403 aa)    
Predicted Functional Partners:
Cseg_3414
PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: ccs:CCNA_00915 xylene monooxygenase electron transfer component.
       0.549
Cseg_2805
KEGG: cak:Caul_3141 general stress protein.
 
    0.520
Cseg_0039
PFAM: protein of unknown function DUF1206; KEGG: cak:Caul_3704 hypothetical protein.
 
     0.472
Cseg_3466
KEGG: bxe:Bxe_B0221 GAF sensor hybrid histidine kinase; PFAM: HWE histidine kinase; MASE1 domain protein; GAF domain protein; SMART: GAF domain protein.
 
   
 0.467
Cseg_0401
PFAM: phospholipase D/Transphosphatidylase; KEGG: ccs:CCNA_00556 phospholipase D.
 
    0.459
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.438
Cseg_0178
KEGG: ccs:CCNA_00666 response regulator receiver domain protein; PFAM: response regulator receiver; SMART: response regulator receiver.
  
     0.427
Cseg_4069
Putative PAS/PAC sensor protein; KEGG: mrd:Mrad2831_6244 response regulator receiver modulated GAF sensor protein; PFAM: HWE histidine kinase; GAF domain protein; PAS fold-2 domain protein; Phytochrome central region domain protein; SMART: GAF domain protein.
  
     0.427
Cseg_0154
KEGG: pzu:PHZ_c0598 sensor histidine kinase; PFAM: HWE histidine kinase; PAS fold-4 domain protein; SMART: PAS domain containing protein.
  
     0.417
Cseg_1205
KEGG: oan:Oant_4311 signal transduction histidine kinase; manually curated; PFAM: HWE histidine kinase; PAS fold-4 domain protein.
  
     0.408
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.