STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3461KEGG: ccs:CCNA_03063 hypothetical protein. (335 aa)    
Predicted Functional Partners:
Cseg_3462
PFAM: transcriptional regulator PadR family protein; KEGG: ccs:CCNA_03064 transcriptional regulator, PadR family.
 
     0.936
Cseg_3270
PFAM: glycosyl transferase group 1; KEGG: ccs:CCNA_01055 glyscosyl transferase.
  
     0.718
Cseg_4208
KEGG: ccs:CCNA_03813 intermediate filament-like cell shape determinant CreS.
  
     0.672
Cseg_0185
PFAM: Abortive infection protein; KEGG: ccs:CCNA_00229 CAAX amino terminal protease family protein.
 
     0.637
Cseg_3158
PFAM: Protein of unknown function DUF2491; KEGG: ccs:CCNA_02449 hypothetical protein.
  
     0.628
Cseg_1254
KEGG: ccs:CCNA_01183 hypothetical protein.
  
     0.623
Cseg_0950
PFAM: GtrA family protein; KEGG: ccs:CCNA_02984 monosaccharide translocase (flippase type).
  
     0.622
Cseg_2679
KEGG: ccs:CCNA_01260 hypothetical protein.
  
     0.614
Cseg_0995
KEGG: ccs:CCNA_02867 phage tail length tape measure-related protein.
  
     0.606
Cseg_2837
KEGG: ccr:CC_2186 hypothetical protein.
  
     0.597
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.