STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3527Response regulator receiver protein; PFAM: LytTr DNA-binding region; KEGG: ccs:CCNA_03131 LytR/AlgR-family transcriptional regulator. (274 aa)    
Predicted Functional Partners:
Cseg_3528
KEGG: ccs:CCNA_03134 predicted dienelactone hydrolase.
 
     0.690
Cseg_3814
PFAM: Protein of unknown function DUF2306, membrane; KEGG: ccs:CCNA_00334 hypothetical protein.
 
     0.666
Cseg_3174
KEGG: cak:Caul_1534 hypothetical protein.
  
     0.636
Cseg_3529
SMART: AAA ATPase; TIGRFAM: ATPase, FliI/YscN family; KEGG: ccs:CCNA_03135 flagellum-specific ATP synthase FliL; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein.
       0.498
Cseg_3530
KEGG: ccs:CCNA_03136 flagellar export protein FliJ.
       0.498
Cseg_2067
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; KEGG: ote:Oter_2330 signal transduction histidine kinase, LytS.
  
 
 0.482
Cseg_2614
KEGG: ccs:CCNA_01660 hypothetical protein.
  
     0.430
Cseg_3388
Flagellar hook-associated protein FlgL; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
     0.420
Cseg_3934
PFAM: protein of unknown function DUF1353; KEGG: cak:Caul_4690 hypothetical protein.
  
     0.418
Cseg_1944
KEGG: ccs:CCNA_01532 regulatory protein FlaY.
  
     0.412
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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