STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3528KEGG: ccs:CCNA_03134 predicted dienelactone hydrolase. (333 aa)    
Predicted Functional Partners:
Cseg_3529
SMART: AAA ATPase; TIGRFAM: ATPase, FliI/YscN family; KEGG: ccs:CCNA_03135 flagellum-specific ATP synthase FliL; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein.
       0.710
Cseg_3530
KEGG: ccs:CCNA_03136 flagellar export protein FliJ.
       0.710
Cseg_3527
Response regulator receiver protein; PFAM: LytTr DNA-binding region; KEGG: ccs:CCNA_03131 LytR/AlgR-family transcriptional regulator.
 
     0.690
Cseg_3531
KEGG: amr:AM1_1228 hypothetical protein.
       0.571
Cseg_1235
KEGG: ccs:CCNA_01163 ice nucleation protein.
  
     0.550
Cseg_2342
KEGG: dge:Dgeo_1926 dienelactone hydrolase-like protein.
  
     0.530
Cseg_3969
KEGG: ccs:CCNA_01163 ice nucleation protein.
  
     0.478
Cseg_3934
PFAM: protein of unknown function DUF1353; KEGG: cak:Caul_4690 hypothetical protein.
  
     0.434
Cseg_1406
KEGG: ccs:CCNA_02104 hypothetical protein.
  
     0.432
Cseg_1954
KEGG: ccs:CCNA_01163 ice nucleation protein.
  
     0.432
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.