STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3606TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: ccs:CCNA_00799 ABC transporter, ATP-binding protein CydD; SMART: AAA ATPase. (546 aa)    
Predicted Functional Partners:
Cseg_3607
TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; KEGG: ccs:CCNA_00798 ABC transporter, ATP-binding protein CydC; SMART: AAA ATPase.
 
 
0.999
Cseg_3604
KEGG: ccs:CCNA_00801 cytochrome bd-type quinol oxidase, subunit 2 CydB; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II.
 
  
 0.988
Cseg_3605
PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: ccs:CCNA_00800 cytochrome bd-type quinol oxidase, subunit 1 CydA.
 
  
 0.980
Cseg_3603
KEGG: cak:Caul_0636 cyd operon protein YbgT; TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein.
  
  
 0.616
Cseg_3140
KEGG: cak:Caul_0295 PTS system, N-acetylglucosamine-specific IIBC subunit; TIGRFAM: PTS system, N-acetylglucosamine-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site.
      
 0.420
Cseg_3737
KEGG: cak:Caul_0295 PTS system, N-acetylglucosamine-specific IIBC subunit; TIGRFAM: PTS system, N-acetylglucosamine-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site.
      
 0.420
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.