STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3653PFAM: SH3 type 3 domain protein; 17 kDa surface antigen; KEGG: ccs:CCNA_03169 hypothetical protein. (184 aa)    
Predicted Functional Partners:
Cseg_1433
Peptidase M23; KEGG: ccs:CCNA_02075 peptidoglycan-specific endopeptidase, M23 family; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
  
 
 0.543
Cseg_2201
PFAM: outer membrane chaperone Skp (OmpH); KEGG: ccs:CCNA_01991 hypothetical protein.
  
 
 0.493
Cseg_3654
PFAM: Glutathione S-transferase domain; KEGG: ccs:CCNA_03185 glutathione S-transferase; Belongs to the GST superfamily.
       0.443
Cseg_0112
PFAM: amidohydrolase; WD40 domain protein beta Propeller; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: ccs:CCNA_00115 TolB protein.
  
 
 0.442
Cseg_1848
PFAM: amidohydrolase; WD40 domain protein beta Propeller; KEGG: ami:Amir_5049 amidohydrolase.
  
 
 0.442
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.441
Cseg_2736
KEGG: sus:Acid_2762 hypothetical protein.
  
 
 0.441
Cseg_4214
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
 
 0.416
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.