STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3732PFAM: tryptophan halogenase; KEGG: ccs:CCNA_01023 tryptophan halogenase superfamily protein. (516 aa)    
Predicted Functional Partners:
Cseg_3734
KEGG: ccs:CCNA_01021 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
 
     0.807
Cseg_3733
PFAM: tryptophan halogenase; KEGG: ccs:CCNA_01022 tryptophan halogenase superfamily protein.
 
    
0.789
Cseg_3764
SMART: transcription factor jumonji jmjC domain protein; KEGG: xac:XAC4050 PASs1-related protein.
 
     0.765
Cseg_2007
PFAM: SapC family protein; KEGG: cak:Caul_2408 SapC family protein.
 
     0.764
Cseg_2941
KEGG: ccs:CCNA_02370 TonB-dependent maltose outer membrane transporter MalA; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
 
     0.762
Cseg_3272
SMART: transcription factor jumonji jmjC domain protein; KEGG: ccr:CC_1001 Pass1-related protein.
 
     0.762
Cseg_2008
SMART: transcription factor jumonji jmjC domain protein; KEGG: cak:Caul_2409 hypothetical protein.
 
     0.760
Cseg_2050
KEGG: ccs:CCNA_02895 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
 
     0.758
Cseg_2006
KEGG: cak:Caul_2407 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor.
 
     0.753
Cseg_3273
PFAM: SapC family protein; KEGG: ccs:CCNA_01052 SapC family protein.
 
     0.753
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.