STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3812PFAM: Carotenoid oxygenase; KEGG: ccs:CCNA_00336 lignostilbene-alpha,beta-dioxygenase. (488 aa)    
Predicted Functional Partners:
Cseg_3813
PFAM: Protein of unknown function DUF2141; KEGG: ccs:CCNA_00335 hypothetical protein.
 
     0.830
Cseg_3814
PFAM: Protein of unknown function DUF2306, membrane; KEGG: ccs:CCNA_00334 hypothetical protein.
       0.642
Cseg_3815
Response regulator receiver protein; PFAM: LytTr DNA-binding region; KEGG: ccs:CCNA_00333 LytTr DNA-binding domain protein.
 
     0.514
Cseg_3811
PFAM: regulatory protein TetR; KEGG: ccs:CCNA_00337 transcriptional regulator, TetR family.
       0.476
Cseg_0849
KEGG: ccs:CCNA_03209 acetyl-coenzyme A synthetase; Belongs to the thiolase-like superfamily. Thiolase family.
  
     0.464
Cseg_1158
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ccs:CCNA_02614 fumarylacetoacetase.
      
 0.428
Cseg_4054
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ccs:CCNA_03682 fumarylpyruvate hydrolase.
      
 0.428
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
   
  
 0.423
Cseg_1153
PFAM: band 7 protein; KEGG: ccs:CCNA_02619 stomatin/prohibitin-related protein.
  
  
  0.418
Cseg_3651
Rieske (2Fe-2S) iron-sulfur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: ccs:CCNA_00774 ring hydroxylating diooxygenase.
  
   
 0.406
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.