STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_3814PFAM: Protein of unknown function DUF2306, membrane; KEGG: ccs:CCNA_00334 hypothetical protein. (186 aa)    
Predicted Functional Partners:
Cseg_3815
Response regulator receiver protein; PFAM: LytTr DNA-binding region; KEGG: ccs:CCNA_00333 LytTr DNA-binding domain protein.
 
     0.847
Cseg_0945
PFAM: LytTr DNA-binding region; KEGG: swi:Swit_3222 response regulator receiver protein.
 
     0.677
Cseg_3527
Response regulator receiver protein; PFAM: LytTr DNA-binding region; KEGG: ccs:CCNA_03131 LytR/AlgR-family transcriptional regulator.
 
     0.666
Cseg_3813
PFAM: Protein of unknown function DUF2141; KEGG: ccs:CCNA_00335 hypothetical protein.
       0.656
Cseg_3812
PFAM: Carotenoid oxygenase; KEGG: ccs:CCNA_00336 lignostilbene-alpha,beta-dioxygenase.
       0.642
Cseg_1517
KEGG: cak:Caul_0206 hypothetical protein.
  
     0.408
Cseg_1412
KEGG: ccs:CCNA_02098 molybdopterin-guanine dinucleotide biosynthesis protein A.
  
     0.404
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.